but did Emma ever figure out Neal or someone with knowledge of Neal’s address sent her the note with the potion?
Nope. And so far as we know, no one has figured it out.
but surely she would have acknowledged in some capacity that Neal was the logical guess as to who sent Hook in the first place?
lol. logic.
I also miss Henry and Emma’s dynamic. He helped move the plot along on his own instead of being used as a glorified prop for a ship.
Who is Henry? There is no Henry. There is only Hook.
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"He was a lot of things to me" "The only conclusion was love"